Date: Oct 14, 2006
Circuit: Estoril
Location: Portugal
| Pos. | Rider Name | Team | Time |
|---|---|---|---|
| 1 | Alvaro BAUTISTA | Master - MVA Aspar Team | 40'48.792 |
| 2 | Hector FAUBEL | Master - MVA Aspar Team | +15.098 |
| 3 | Mika KALLIO | Red Bull KTM GP 125 | +15.112 |
| 4 | Lukas PESEK | Derbi Racing | +15.745 |
| 5 | Julian SIMON | Red Bull KTM GP 125 | +15.778 |
| 6 | Tomoyoshi KOYAMA | Malaguti Ajo Corse | +27.588 |
| 7 | Fabrizio LAI | Valsir Seedorf Racing | +27.609 |
| 8 | Gabor TALMACSI | Humangest Racing Team | +27.652 |
| 9 | Simone CORSI | Squadra Corse Metis | +31.877 |
| 10 | Sandro CORTESE | Elit - Caffe Latte | +38.878 |
| 11 | Karel ABRAHAM | Cardion AB Motoracing | +39.265 |
| 12 | Pol ESPARGARO | Team RACC Derbi | +44.501 |
| 13 | Lorenzo ZANETTI | Skilled I.S.P.A. Racing | +44.543 |
| 14 | Federico SANDI | SSM Racing | +46.069 |
| 15 | Sergio GADEA | Master - MVA Aspar Team | +48.087 |
| 16 | Randy KRUMMENACHER | Red Bull KTM GP 125 | +59.731 |
| 17 | Esteve RABAT | Honda BQR | +59.788 |
| 18 | Imre TOTH | Team Toth | +1'07.489 |
| 19 | Raffaele DE ROSA | Multimedia Racing | +1'07.519 |
| 20 | Kazuma WATANABE | Humangest Racing Team | +1'21.367 |
| 21 | Michele CONTI | Valsir Seedorf Racing | +1'21.417 |
| 22 | Dino LOMBARDI | 3C Racing | +1'26.874 |
| 23 | Mateo TUNEZ | Master - MVA Aspar Team | +1'29.379 |
| 24 | Manuel HERNANDEZ | Nocable Angaia Racing | +1'29.402 |
| 25 | Joey LITJENS | Arie Molenaar Racing | +1'29.420 |
